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Profile Align

user: GUEST

MSA Input Paste a multiple sequence alignment (MSA) in this text area
Sequence(s) Input Paste one or more sequences in this text area, or their accession numbers
Limitations:	Maximum number of sequences is 300 Maximum total length of sequences is 300000

Show Advanced parameters
Include original MSA in the output ?	Yes No	Warning: This service may require several minutes, so please be patient.
Multiple matches per sequence (pfcalibrate) ?	Yes No

Align method	local on query   global on query	Warning: This service may require several minutes, so please be patient.
Cutoff (normalized score) inclusion threshold	12.0 (e-value=0.000021) 10.0 (e-value=0.0021) 9.0 (e-value=0.021) 8.5 (e-value=0.067) 8.0 (e-value=0.21) 7.5 (e-value=0.67) 7.0 (e-value=2.1) 6.5 (e-value=6.7)
Cutoff (normalized score) report threshold	12.0 (e-value=0.000021) 10.0 (e-value=0.0021) 9.0 (e-value=0.021) 8.5 (e-value=0.067) 8.0 (e-value=0.21) 7.5 (e-value=0.67) 7.0 (e-value=2.1) 6.5 (e-value=6.7) 6.0 (e-value=21) 5.5 (e-value=67)
Cluster matches at approx. identity level	100 % (all) 90 % 80 % 70 % 60 % 50 %

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