Revision Date: 2008-03-05
We would like to receive your comments about this software. If you have observed any errors or if you want to make constructive comments or contributions, please feel free to contact the authors via the official website of this project, http://hitkeeper.sourceforge.net.
Have fun!
Contents
1 Introduction
2 Connecting
3 Data used in this tutorial
4 Retrieving information
5 Name and synonyms
6 Simple query
7 Simple query II
8 Query identifier
9 Find sequences by annotation: “all thioredoxins from Swiss-Prot”
10 Searching hit list
11 Searching hit list (contd.)
12 Retrieve hits on given motif(s): “domain A or domain B”
13 Retrieve hits containing multiple motifs: “domain A and domain B”
14 Filter hits by taxonomy
15 Filter motifs by taxonomy: “patterns found in birds but not mammals”
16 Metamotif I: “domain A followed by domain B”
17 Metamotif II: overlapping motifs
18 Metamotif III: overlapping motifs in a given taxonomy
19 Metamotif IV: “domain A or domain B”, “domain A and domain B”
20 Metamotif V: successive hits by a motif
21 Abstract metamotif queries: “pairs of (any) patterns”
22 Acknowledgments
1 Introduction
2 Connecting
3 Data used in this tutorial
4 Retrieving information
5 Name and synonyms
6 Simple query
7 Simple query II
8 Query identifier
9 Find sequences by annotation: “all thioredoxins from Swiss-Prot”
10 Searching hit list
11 Searching hit list (contd.)
12 Retrieve hits on given motif(s): “domain A or domain B”
13 Retrieve hits containing multiple motifs: “domain A and domain B”
14 Filter hits by taxonomy
15 Filter motifs by taxonomy: “patterns found in birds but not mammals”
16 Metamotif I: “domain A followed by domain B”
17 Metamotif II: overlapping motifs
18 Metamotif III: overlapping motifs in a given taxonomy
19 Metamotif IV: “domain A or domain B”, “domain A and domain B”
20 Metamotif V: successive hits by a motif
21 Abstract metamotif queries: “pairs of (any) patterns”
22 Acknowledgments