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Hits is a free database devoted to protein domains. It is also a collection of tools for the investigation of the relationships between protein sequences and motifs described on them. These motifs are defined by an heterogeneous collection of predictors, which currently includes regular expressions, generalized profiles and hidden Markov models.

Last news
Sep 2013 Update mafft to version 7.058b
Sep 2013 Update hmmer3 to version 3.1b1
Aug 2013 Link to new TCoffee server
May 2011 New Web interface
Apr 2010 Add hmmer3 service.
Jun 2009 Add the CS-BLAST tool
Oct 2008 Update of the Jalview applet to release 2.4
Aug 2008 Add a text search to find sequence, motif or taxonomy matches.
Jul 2008 Add mkdom2 and hmmer services.
Jan 2008 A link to RAxML (phylogenetic tree) was added from the MSA hub.
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